|16:00 - 17:30||Welcome reception and poster session 1|
|17:30 - 18:05||Tetsuya Hayashi||Nation-wide high-resolution phylogenomic analysis of Rickettsia japonica in Japan|
|18:05 - 18:40||Susan Holmes||Using all the data for analyses of the Human Microbiome|
|8:30 - 9:05||Nigel French||Incursion, evolution and transmission of zoonotic pathogens in an isolated ecosystem: three tales from New Zealand|
|9:05 - 9:40||Stephen Beres||Population pathogenomics of a current ongoing Streptococcus pyogenes invasive disease epidemic|
|9:40 - 10:15||Hattie Chung||Selection and migration timescales that shape the spatial diversity of a pathogen in the human lung|
|10:15 - 10:45||BREAK|
|10:45 - 11:20||Denise Kühnert||Phylodynamic analysis of (rapidly) evolving pathogens|
|11:20 - 11:55||Jennifer Gardy||Genomics in the public health TB lab: what have we done, where are we going, and why does evolution keep screwing everything up?|
|17:00 - 17:35||Ashlee Earl||Rewinding the clock on drug resistant tuberculosis|
|17:35 - 18:10||Christophe Fraser||Transmission and genetic paraphyly|
|18:10 - 18:45||Alan McNally||Pan-genome analysis provides an unprecedented resolution view of an emerging bacterial pathogen|
|18:45 - 19:15||BREAK|
|19:15 - 19:50||Yonatan Grad||Using within-host RSV and population-level influenza viral diversity to explore the impact of host selective pressure on viral evolutionary dynamics|
|19:50 - 20:25||Edward Feil||How much should we care about the variation in intergenic sites?|
|8:30 - 9:05||Nobuto Takeuchi||Gene-specific selective sweeps in bacteria and archaea caused by negative frequency- dependent selection|
|9:05 - 9:40||Jukka Corander||Whole-genome linkage analysis reveals co-evolutionary mechanisms of antibiotic resistance in the pneumococcus|
|9:40 - 10:15||Vegard Eldholm||Out of Africa? A phylodynamic analysis of TB transmission within a large immigrant group in Norway|
|10:15 - 10:45||BREAK|
|10:45 - 11:20||Caitlin Pepperell||Adaptation of the Type VII secretion system|
|11:20 - 11:55||Bill Hanage||Evolution in the short term - the potential and the limits for studying transmission|
|16:00 - 16:35||Tami Lieberman||Intrapatient pathogen diversity reveals past selective pressures and patterns of within- host dissemination|
|16:35 - 17:10||Paul Rainey||Untangling the origins of a plant disease outbreak|
|17:10 - 17:45||Caroline Colijn||Two flavours of tree comparisons with applications|
|17:45 - 18:15||BREAK|
|18:15 - 18:50||Steve Baker||A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure|
|18:50 - 19:25||Stephen Bentley||Increased incidence and increased virulence of listeria monocytogenes sequence type 6 meningitis explained through pathogen population genomics|
|19:30 - 21:00||DINNER|
|21:00 - 22:00||Poster session 2|
|8:30 - 9:05||Kelly Wyres||Exploring Klebsiella capsule diversity through analysis of whole-genome sequences|
|9:05 - 9:40||Lucy Weinert||Replicated transitions from carriage to disease is associated with genome reduction in a zoonotic pathogen|
|9:40 - 10:15||Nick Croucher||'Intragenomic conflict' and the evolution of bacterial transformation|
|10:15 - 10:45||BREAK|
|10:45 - 11:20||Danny Wilson||Within-host evolution of Staphylococcus aureus during asymptomatic carriage and invasive disease|
|11:20 - 11:55||Ben Cooper||Reconstructing transmission trees for multiply antibiotic-resistant bacteria using densely sampled genomic data|
|17:00 - 17:35||Koji Yohara||Methods for studying recombination hot regions and population structure in bacteria|
|17:35 - 18:10||Nadia El-Mabrouk||Detection of codon reassignment and tRNA shift of function -Application to Bacillus genomes|
|18:10 - 18:45||Kathryn Holt||Genomic insights into the evolution and transmission of drug resistant Acinetobacter baumannii|
|18:45 - 19:15||BREAK|
|19:15 - 19:50||Craig Winstanley||Use of genomics to study the evolution of Pseudomonas aeruginosa populations|
|19:50 - 20:25||Alison Mather||Investigating long-term and short-term transmission using genomics|
|Siouxsie Wiles||Evolution in Action: in vivo experimental evolution of the pathogenic bacterium Citrobacter rodentium|
|Michael Gutmann||Fast Likelihood-Free Inference via Bayesian Optimization|
|Tadasuke Ooka||Genomic diversity and evolutionary insights of Escherichia albertii, an emerging enteropathogen closely related to Escherichia coli|
|Claire Gorrie||Asymptomatic carriage of K. pneumoniae and its role in hospital acquired infection|
|Yoshitoshi Ogura||Identification of high Stx2-producing Escherichia coli O157 clades by WGS-based phylogenetic analysis|
|Yasuhiro Gotoh||Explosive amplification of MITEs and a possible genome evolution pathway of Treponema phagedenis|
|Minna Vehkala||Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes|
|Rene Niehus||Migration and horizontal gene transfer divide microbial genomes into multiple niches|
|Ken-ichi Lee||Diffuse outbreak investigation in enterohemorrhagic Escherichia coli O121 by whole genome sequencing|
|Takayuki Wada||Estimation of transmission routes of Mycobacterium tuberculosis based on genotypic and genomic analysis of a local prefectural surveillance in Japan|
|Sayaka Mino||Genetic structure and spatial distribution pattern of chemolithoautotrophic Epsilonproteobacteria from deep-sea hydrothermal vents|
|Takahiko Shiba||Dissimilarities of functional keystone species in co-occurrence network enable discrimination of intractable polymicrobial infectious diseases|
|Fumito Maruyama||A hot-region promoting intraspecific divergence by shift of genetic elements related to defense systems against invading DNA|
|Iwamoto Tomotada||Dynamic changes in genomic architecture of Mycobacterium avium in accordance with its phylogenetic diversification|
Confirmed participants will be provided an accommodation booking form which they should email to the Shiga Lake hotel to make room reservation .
If you wish to participate in the meeting and give either a an oral or a poster presentation, please register below and send proposed title and short abstract to firstname.lastname@example.org. Indicate your preference of the presentation format and eventual restrictions regarding availability for presentation in case you cannot attend the whole duration of the meeting.
Rooms have been reserved at the Shiga Lake Hotel and can be booked.
Confirmed participants will be provided an accommodation booking form which they should email to the Shiga Lake hotel to make room reservation.
In case the rooms reserved to workshop delegates are sold out, please check availability from the neighboring hotels before making further travel arrangements.
Below are some links to nearby hotels.
Tokyo airport to Nagano by train:
There are two train lines out of Narita Airport. The JR company lines take you right into Tokyo. It can be quicker to use the Keisei Skyliner service to Ueno and pick up the JR Shinkansen from there.
This is a more direct route, but involves buying two lots of tickets and changing stations at Ueno (a 5 minute walk). A great website to see times for trains in Japan is http://www.hyperdia.com/. Highly recommended as it shows transfer walking times, prices etc too.
Use Shinkansen train (about 90 minutes journey time, 2-3 trains per hour, 8200 Yen for a non-reserved seat, seat reservation costs around 700 Yen)
Nagano to Hasuike stop (close to the Lake Hotel): Bus (70 min, 1 run /hr, 1700 JPY)