Publications

2019

Journal Articles

Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data



Clinical Infectious Diseases 2019

Journal

Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study



Lancet Infectious Diseases 2019

Journal

Putative novel cps loci in a large global collection of pneumococci



Microbial Genomics 2019

Journal

International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact


EbioMedicine 2019

Journal

Publications

2018

Journal Articles

Global distribution of invasive serotype 35D Streptococcus pneumoniae post-PCV13 introduction



Journal of Clinical Microbiology 2018

Journal

Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci.




PLOS Pathogens 2018

Journal

Posters

Diversity of pneumococcal carriage in the Upper River Region of The Gambia in 2009 prior to the introduction of pneumococcal conjugate vaccines.

ISPPD 2018

Poster

Molecular characterization of Streptococcus pneumoniae strains isolated from invasive disease in the pre- and post-PCV10 periods in Brazil, 2005-2015.
ISPPD 2018
Poster

Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci.
ISPPD 2018

Poster

Longitudinal surveillance reveals high clonality of pneumococcal carriage in the first year of life in The Gambia.

ISPPD 2018

Poster

Genetic diversity and distribution of pneumococcal surface lipoproteins and implications on potential protein-based vaccines.
ISPPD 2018
Poster

Population genomics reveals vaccination-induced genotypic changes in carried pneumococcal population.

ISPPD 2018

Poster

Genetic diversity, serotype prediction and resistotyping of nasopharyngeal isolates of S. pneumoniae from Indian Hajj pilgrims by whole genome sequencing

ISPPD 2018

Poster

Defining the lineages of the pneumococcus to understand disease and vaccine impact: a multi-continent genome analysis.

ISPPD 2018

Poster

Hotspots of recombination in pneumococci isolated from nepalese children prior to PCV introduction

ISPPD 2018

Poster

Insights into potential PCV effects on pneumococcal lineages using whole genome sequencing.

ISPPD 2018

Poster

Comparative genomic analysis of samples collected pre- and post-introduction of pneumococcal conjugate vaccine (PCV7) in Hong Kong.
ISPPD 2018
Poster

A multidrug resistant pneumococcal CC230 sub-lineage harbouring a mosaic tet(S/M) gene encoding tetracycline resistance in South Africa.
ISPPD 2018
Poster

Whole genome sequencing of Streptococcus pneumoniae serogroup 19 isolates before the introduction of vaccine in the National Immunization Programme of India (NIP).

ISPPD 2018

Poster

Indian population genomics datasets describing the pre-vaccine evolutionary epidemiology of Streptococcus pneumoniae using a whole genome sequencing approach.
ISPPD 2018
Poster

Nasopharyngeal carriage of Streptococcus pneumoniae serotype 6A/6B in Gambian infants is highly dynamic within the first year of life: a longitudinal study.

ISPPD 2018

Poster

Serotype diversity and putative novel cps loci in a large, global collection of pneumococci.

ISPPD 2018

Poster

Invasive Streptococcus pneumoniae serotype 35B in South Africa, 2005-2016.

ISPPD 2018

Poster

Antimicrobial resistance determinants and susceptibility profiles of pneumococcal carriage isolates recovered from healthy children in Peru pre-PCV introduction.

ISPPD 2018

Poster

Antibiotic resistance of Streptococcus pneumoniae causing paediatric meningitis in west and central Africa, 2007-2016.

ISPPD 2018

Poster

Population structure and erythromycin resistance of Streptococcus pneumoniae isolates collected in Moscow between 2011-2015.
ISPPD 2018
Poster

Understanding the links between non-invasive and invasive pneumococci in children with severe pneumonia through comparative genomics.
ISPPD 2018
Poster

Hospital based surveillance of vaccine preventable pneumococcal meningitis among children <=59 months in west and central Africa, 2010 to 2016.
ISPPD 2018
Poster

Continued surveillance of invasive pneumococcal disease in African countries is needed to guide optimal vaccine design.

ISPPD 2018

Poster

Impact of vaccination on nasopharyngeal carriage pneumococcal genotypic diversity among children in The Gambia: a longitudinal study.
ISPPD 2018
Poster

Genomic epidemiology of Streptococcus pneumoniae serotype 5 pre and post introduction of PCV13 in The Gambia.
ISPPD 2018
Poster


2017

Journal Articles

Antimicrobial resistance determinants and susceptibility profiles of pneumococcal isolates recovered from Trinidad and Tobago.

JGAR 2017

Journal Microreact Data

Key features of invasive pneumococcal isolates recovered in Lima, Peru determined through whole genome sequencing.

International Journal of Medical Microbiology 2017

Journal

Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi.

Vaccine 2017

Journal

Posters

Rapid pneumococcal evolution in response to co-trimoxazole prophylaxis in a high-HIV burden population.
ABPMH 2017
Authors Poster

2016

Journals

Phylogenetic analysis of invasive serotype 1 pneumococcus in South Africa, 1989 to 2013.

Journal of Clinical Microbiology 2016
Journal

Detection of Streptococcus pneumoniae non vaccine serotype 12F clone 989 with acquired antibiotic resistance, circulating globally.
ISPPD 2016
Authors Poster

Detection of Streptococcus pneumoniae non vaccine serotype 12F clone 989 with acquired antibiotic resistance, circulating globally.
IMMEM XI
Authors Poster